PROTEOMICS STAGE

Mapping Proteins, Unveiling Pathways: Powering Research with Next-Gen Proteomics

The Proteomics Stage explores challenges in deriving meaningful clinical insights from large proteomics datasets, including single-cell and spatial proteomics, scaling clinical proteomics and advancing precision medicine through innovative technologies.

We also have a range of activities such as workshops and roundtables. Please see here for more information

DAY 1

Day 1 on The Proteomics Stage focusses on Next Generation Proteomics, Population Proteomics as well as Proteomic Profiling and Biomarker Discovery

[topic] NEXT GENERATION PROTEOMICS
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The Power of Proteomics for Drug Discovery and Development
  • Industry perspectives on how proteomics (and proteogenomics) is being used to advance drug discovery.
  • Combing proteomics with human genetics-linked clinical data.
  • Investigating system biology effects of genetic perturbations on the proteome.
  • Identifying plasma proteomics biomarkers to inform disease risk and onset.
  • What preclinical information and early disease signatures can be identified from the proteome?
  • Current challenges and emerging opportunities for clinical proteomics.
Speaker
Vice President and Head of Genome Analytics
AstraZeneca
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Advancing Multiomics with Next-Generation Protein Sequencing™: High-Resolution Protein and Proteoform Characterization with an Accessible Workflow
  • Next-Generation Protein Sequencing™ on Platinum®, which significantly enhances the field of proteomics by providing deep insights into functional proteins encoded by the genome. We will discuss the single-molecule protein sequencing workflow that allows for precise protein identification and characterization across a wide range of sample types
  • You’ll learn how this technology can distinguish proteoforms resulting from single amino acid changes, alternative splicing, and post-translational modifications
  • We will also highlight our latest innovations, including the protein Barcoding Kit, which enables sample multiplexing for protein screening applications, and the Library Prep Kit, V2, which streamlines the preparation process, reducing hands-on time while improving data quality. Additionally, we’ll demonstrate how the integrated Platinum software unifies data generation and analysis, making the workflow both accessible and efficient for proteomic studies
  • By the end of this session, you’ll understand how these new capabilities enable the seamless integration of proteomics into multi-omics research, opening new avenues for comprehensive biological insights

Key Takeaways:

  • Single-molecule resolution workflow enables detailed protein identification and characterisation, including distinguishing proteoforms arising from mutations, alternative splicing, and post-translational modifications
  • Protein Barcoding Kit enhances protein screening through multiplexed peptide barcoding, increasing efficiency and decreasing costs
  • Library Prep Kit, V2 streamlines sample preparation, reduces required input, and enhances overall data quality, simplifying the integration of proteomics into multi-omics studies
Speaker
Senior Field Application Scientist
Quantum-Si

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What’s Next for Next-Generation Proteomics?
  • Over the last three years, the applications of next-generation proteomics as a drug discovery and precision medicine tool have expanded exponentially.
  • These expansions have been driven by increases in multiplexing, improved throughput, lower costs and targeted private – public investments, such as the UK Biobank Pharma Proteomics Project.
  • This talk will outline how next-generation proteomics is set to expand even further, both in the short term (marked by even larger population-scale proteogenomics studies) and the medium term (marked by rapidly increased implementation in drug development and clinical settings
Speaker
Director
Johnson & Johnson
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[break] Lunch
  • Exhibition Floor: Wander around the vibrant exhibition floor to see the latest technologies and services on offer
  • Food Options: Grab a sandwich at The Tree of Life Cafe or head on over to the Food Village for a range of hot food options, including Indian, Jamaican and Lebanese food
  • Live Lounge Over Lunch: 15-minute technology-focused presentations
  • Poster Zone: Browse the posters and reach out to potential new collaborators
  • Talkaoke: The Flying Saucer of Chat, a fun and interactive pop-up show that offers you the opportunity to sit down with others and discuss any topic you like
[topic] POPULATION PROTEOGENOMICS
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Harnessing the Power of Proteomics in Biobank Studies to Advance Precision Health
  • Analysing big proteomics data in combination with genomics to improve understanding of disease aetiology
  • Using proteomics to improve risk prediction for multiple diseases and biological ageing.
  • Identifying repurposing or new targets from the circulating proteome
  • Using proteomics to reveal mechanisms linking lifestyles with diseases.
Speaker
Richard Peto Professor of Epidemiology
University of Oxford
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Democratising Proteomics from Biobanks to Benchtop
Join us to learn how the power of NGS-based Proteomics will be democratised in 2025. Untapped Proteomic Insights; Coming to your lab very soon... 
Speaker
Strategic Director - Population Health - Europe
Olink Proteomics

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Molecular Health Perspectives of Self-Sampled Blood Proteomes
  • Circulating proteome
  • Microsampling
  • Molecular monitoring
  • Health dynamics
Speaker
Professor in Translational Proteomics
SciLifeLab
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[break] Break
  • Speed Networking: Fun and useful sessions where you’ll rapidly meet other Festival attendees to immediately expand your network
  • Food Options: Grab a coffee and a cake at The Tree of Life Cafe or head on over to the Food Village for a range of hot food options, including Indian, Jamaican and Lebanese food
  • Exhibition Floor: Wander around the vibrant exhibition floor to see the latest technologies and services on offer
  • Talkaoke: The Flying Saucer of Chat, a fun and interactive pop-up show that offers you the opportunity to sit down with others and discuss any topic you like
[topic] PROTEOMIC PROFILING AND BIOMARKER DISCOVERY
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Interrogating the Circulating Proteome for Cancer Risk Assessment
  • Using UKBB proteogenomic data to study associations between circulating proteins and cancer risk.
  • Applications of clinical proteomics for therapeutic target discovery to support cancer prevention.
  • Highlight the benefits of combining NGS with proteomics data from large prospective cohorts to identify cancer target proteins.
  • Implementing these approaches in several national studies. 
Speaker
Senior Molecular Epidemiologist
University of Oxford
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Bringing Understanding to GWAS Through Proteomics
Speakers
Chief Scientific Officer
Genomics England
European Sales Director
Alamar Biosciences
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Structure-Based Drug Repositioning: From Herpes to Cancer
  • How can a herpes drug bind to a cancer target?
  • Drug targets share similar binding pockets, an unwanted side effect can be beneficial in other contexts
  • I will show algorithms, examples, and experimental validation of structure-based drug repositioning covering cancer, Chagas, and auto-immune disease
Speaker
Professor in bioinformatics
TU Dresden

DAY 2

Day 2 on The Proteomics Stage focusses on Proteomics At Scale as well as Single Cell & Spatial Proteomics .

[topic] PROTEOMICS AT SCALE
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Open Data Practices in Proteomics Enable “Big Data” Approaches
  • Proteomics approaches are increasingly prominent in the life sciences, for instance, in the context of multi-omics integration and personalised medicine.
  • The ProteomeXchange consortium has standardized data submission and dissemination of public MS proteomics data worldwide.
  • Within ProteomeXchange, the PRIDE database at the European Bioinformatics Institute (Hinxton, UK) is the most used resource worldwide, accounting for ~80% of all submitted datasets.
  • As a consequence of this unprecedented amount of data in the public domain, data re-use activities are flourishing and are revolutionizing the proteomics field.
  • Some inspiring examples of how this data is being utilised by the scientific community will be showcased, including “big data” approaches for different applications.
Speaker
Team Lead, Proteomics and Metabolomics
EMBL-EBI
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Genome Wide Analysis of Mass Spectrometry-based Proteomics
  • This talk will present case studies about how large-scale studies incorporating both genomics and proteomics are advancing precision medicine approaches.
  • Showcase the benefits of incorporating proteomics into genomics studies and the applications for advancing disease risk assessment and patient response predictions.
  • What the current challenges are in integrating proteomics and genomics and the new opportunities available to researchers.
Speaker
Professor
University of Cambridge
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Where No Peptide Has Gone Before: Boldly Exploring the “Dark” Cancer Proteome and Immunopeptidome
  • This talk will explore the following concepts and research:
  • The application of proteogenomics in cancer research
  • Constructing personal proteomes from genomics data
  • Investigating non-canonical cancer proteins and peptides
Speaker
Principal Bioinformatician
ICR
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[break] Lunch
  • Exhibition Floor: Wander around the vibrant exhibition floor to see the latest technologies and services on offer
  • Food Options: Grab a sandwich at The Tree of Life Cafe or head on over to the Food Village for a range of hot food options including Indian, Jamaican and Lebanese food
  • Biodata Showcase: 15-minute technology-focused presentations
  • Poster Zone: Browse the posters and reach out to potential new collaborators
  • Talkaoke: The Flying Saucer of Chat, a fun and interactive pop-up show that offers you the opportunity to sit down with others and discuss any topic you like
[topic] PROTEOMIC BIOMARKERS & PROFILING
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Spatial Tissue Proteomics to Assess Health and Disease
  • Emerging spatial proteomics approaches to profile diseases at high biological resolution
  • Deep Visual Proteomics: Marrying microscopy, deep learning and ultrasensitive mass spectrometry
  • Cancer systems biology applications powered by cell-type and spatially resolved proteomics 
Speaker
Group Leader
Max Delbruck Center for Molecular Medicine
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Driving Discovery: Single-Cell Multiomics with the MultiPro® Human Discovery Panel
  • Single-cell multiomics is a key driver in our understanding of cellular heterogeneity. 
  • CITE-seq has revolutionized single-cell multiomics, however, it has been limited to profiling cell surface proteins. 
  • We introduce the MultiPro Human Discovery Panel, a 347-plex DNA-barcoded antibody panel primarily focused on intracellular proteins (transcription factors, phospho-epitopes, cytokines, signalling pathways). 
  • Data will be presented to demonstrate the power for discovery.
Speaker
Director of Product,
Proteintech Genomics
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Innovations in Single-cell Proteomics
  • Using the latest single cell proteomics methods to understand virus replication biology
  • Developing new methods to improve sensitivity, depth and coverage of single-cell proteomics methods
  • Applications to different model systems and improving analysis
Speaker
Reader, Biochemistry, Cell & Systems Biology
University of Liverpool
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[break] Break
  • Speed Networking: Fun and useful sessions where you’ll rapidly meet other Festival attendees to immediately expand your network
  • Food Options: Grab a coffee and a cake at The Tree of Life Cafe or head on over to the Food Village for a range of hot food options, including Indian, Jamaican and Lebanese food
  • Exhibition Floor: Wander around the vibrant exhibition floor to see the latest technologies and services on offer
  • Talkaoke: The Flying Saucer of Chat, a fun and interactive pop-up show that offers you the opportunity to sit down with others and discuss any topic you like
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Clinical Proteomics: Depth and High-Throughput
  • The identification of biomarkers on clinical samples (CSF/plasma) is crucial to differentiate between clinical severity, predict disease progression and help in prognosis and patient stratification
  • The combination of new sample preparation strategies with developments in mass spectrometry is allowing to increase the proteomes depths and detect proteins beyond the acute phase response. 
Speaker
Technology Lead, Discovery Proteomics
University of Oxford
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Single Cell Proteomics Sheds Light On Neutrophil Functional States
  • Single cell proteomics (SCP) has achieved sufficient coverage to map vital effector, metabolic and signalling pathways in human immune cells
  • SCP can now differentiate and define neutrophil functional states and phenotypes not seen by single cell RNA sequencing
  • SCP will become vital to define the heterogeneity and functional capacities of non-proliferative immune cells such as neutrophils
Speaker
Postdoctoral Researcher
University of Edinburgh